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2024年5月24日发(作者：)
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新一代测序数据分析软件汇总
Integrated solutions
CLCbio Genomics Workbench - de novo and reference
assembly of Sanger, Roche FLX, Illumina, Helicos, and
SOLiD data. Commercial next-gen-seq software that
extends the CLCbio Main Workbench software. Includes
SNP detection, CHiP-seq, browser and other features.
Commercial. Windows, Mac OS X and Linux.
Galaxy - Galaxy = interactive and reproducible
genomics. A job webportal.
Genomatix - Integrated Solutions for Next
Generation Sequencing data analysis.
JMP Genomics - Next gen visualization and
statistics tool from SAS. They are working with NCGR
to refine this tool and produce others.
NextGENe - de novo and reference assembly of
Illumina, SOLiD and Roche FLX data. Uses a novel
Condensation Assembly Tool approach where reads are
joined via "anchors" into mini-contigs before assembly.
Includes SNP detection, CHiP-seq, browser and other
features. Commercial. Win or MacOS.
SeqMan Genome Analyser - Software for Next
2016
1 / 9
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Generation sequence assembly of Illumina, Roche FLX and
Sanger data integrating with Lasergene Sequence
Analysis software for additional analysis and
visualization capabilities. Can use a hybrid
templated/de novo approach. Commercial. Win or Mac OS
X.
SHORE - SHORE, for Short Read, is a mapping and
analysis pipeline for short DNA sequences produced on
a Illumina Genome Analyzer. A suite created by the 1001
Genomes project. Source for POSIX.
SlimSearch - Fledgling commercial product.
Align/Assemble to a reference
ABySS - Assembly By Short Sequences. ABySS is a de
novo sequence assembler that is designed for very short
reads. The single-processor version is useful for
assembling genomes up to0-50 Mbases in size. The
parallel version is implemented using MPI and is
capable of assembling larger genomes. By Simpson JT and
others at the Canadas Michael Smith Genome Sciences
Centre. C++ as source.
BFAST - Blat-like Fast Accurate Search Tool.
Written by Nils Homer, Stanley F. Nelson and Barry
2016
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